Gene: Zic1 ENSMUSG00000032368

Description

zinc finger protein of the cerebellum 1 [Source:MGI Symbol;Acc:MGI:106683]

Gene Synonyms

odd-paired homolog

Location

Chromosome 9: 91,240,111-91,247,863 reverse strand.

GRCm39:CM001002.3

About this gene

This gene has 3 transcripts (splice variants), 194 orthologues, 13 paralogues and is associated with 20 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000034927.13	Zic1-201	5606	447aa	ENSMUSP00000034927.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS23403	P46684	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000065360.5	Zic1-202	2811	447aa	ENSMUSP00000068858.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS23403	P46684	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000173121.2	Zic1-203	395	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Gene: Zic1 ENSMUSG00000032368

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Gene: Zic1 ENSMUSG00000032368

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