Description

synaptotagmin-like 4 [Source:MGI Symbol;Acc:MGI:1351606]

INSDC coordinates

chromosome:GRCm38:CM001013.2:133936385:133981812:1

About this gene

This gene has 5 transcripts (splice variants), 68 orthologues, 4 paralogues and is a member of 1 Ensembl protein family.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Sytl4-001ENSMUST000000336083753673aaENSMUSP00000033608
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS30388Q549X6 Q9R0Q1 NM_013757
NP_038785
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Sytl4-002ENSMUST000001132973306502aaENSMUSP00000108922
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS72429Q9R0Q1 NM_001290717
NM_001290718
NP_001277646
NP_001277647
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Sytl4-003ENSMUST000001132942958502aaENSMUSP00000108919
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q9R0Q1 NM_001290719
NP_001277648
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Sytl4-005ENSMUST00000174542741186aaENSMUSP00000134030
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G3UYC6 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Sytl4-004ENSMUST00000174091624No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays