Description

integrin alpha L [Source:MGI Symbol;Acc:MGI:96606]

INSDC coordinates

chromosome:GRCm38:CM001000.2:127296260:127335137:1

About this gene

This gene has 5 transcripts (splice variants), 59 orthologues, 17 paralogues and is a member of 1 Ensembl protein family.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Itgal-002ENSMUST0000011776252221161aaENSMUSP00000113946
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS57588B7ZN92 E9QNL8 NM_001253873
NM_008400
NP_001240802
NP_032426
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website
Itgal-001ENSMUST0000010630651941162aaENSMUSP00000101913
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS57589E9Q5M7 NM_001253872
NM_001253874
NP_001240801
NP_001240803
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI4APPRIS candidate principal isoform (longest CCDS)
Glossary entry for APPRIS
APPRIS website
Itgal-003ENSMUST0000012085745331201aaENSMUSP00000113396
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3Z627 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Itgal-004ENSMUST000001184053909765aaENSMUSP00000112591
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YW95 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Itgal-201ENSMUST0000017097136621163aaENSMUSP00000131847
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-P24063 -TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).

Gene-based displays