Description

growth factor independent 1 [Source:MGI Symbol;Acc:MGI:103170]

INSDC coordinates

chromosome:GRCm38:CM000998.2:107716657:107726036:1

About this gene

This gene has 5 transcripts (splice variants), 69 orthologues, 3 paralogues and is a member of 1 Ensembl protein family.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Gfi1-002ENSMUST000000312052860423aaENSMUSP00000135884
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS57371-NM_010278
NP_034408
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Gfi1-001ENSMUST000001591642648423aaENSMUSP00000137229
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS57371--TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Gfi1-201ENSMUST000000654782639489aaENSMUSP00000135039
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS59680H3BJM0 NM_001267621
NP_001254550
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Gfi1-202ENSMUST000001653441482135aaENSMUSP00000134960
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A1L3P3 -TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Gfi1-003ENSMUST00000159263689186aaENSMUSP00000135880
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H3BLQ9 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays