Description

podoplanin [Source:MGI Symbol;Acc:MGI:103098]

Location

Chromosome 4: 143,267,431-143,299,564 reverse strand.

View alleles of this gene on alternate assemblies

INSDC coordinates

chromosome:GRCm38:CM000997.2:143267431:143299564:1

About this gene

This gene has 2 transcripts (splice variants), 1 gene allele, 44 orthologues, is a member of 1 Ensembl protein family and is associated with 3 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Pdpn-001ENSMUST000000303171817172aaENSMUSP00000030317
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS38943Q62011 NM_010329
NP_034459
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P3

PRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Pdpn-002ENSMUST00000119654762159aaENSMUSP00000113776
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS71511A8Y5F6 NM_001290822
NP_001277751
TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Gene-based displays