Description

crystallin, zeta [Source:MGI Symbol;Acc:MGI:88527]

INSDC coordinates

chromosome:GRCm38:CM000996.2:154596711:154623182:1

About this gene

This gene has 11 transcripts (splice variants), 72 orthologues, 4 paralogues and is a member of 1 Ensembl protein family.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Cryz-001ENSMUST000000298502507331aaENSMUSP00000029850
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS17927D3YUG9 D3YWU6 D3Z2X0
D3Z4Q4 P47199
NM_009968
NP_034098
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Cryz-201ENSMUST000001924622505331aaENSMUSP00000142105
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS17927D3YUG9 D3YWU6 D3Z2X0
D3Z4Q4
-GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Cryz-009ENSMUST000001948761059302aaENSMUSP00000142101
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YUG9 D3YWU6 D3Z2X0
D3Z4Q4
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Cryz-003ENSMUST00000155385755137aaENSMUSP00000122619
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YWU6 D3Z4Q4 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Cryz-006ENSMUST00000155232641173aaENSMUSP00000118449
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YUG9 D3YWU6 D3Z2X0
D3Z4Q4
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Cryz-005ENSMUST00000144764581152aaENSMUSP00000121269
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YWU6 D3Z2X0 D3Z4Q4
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Cryz-010ENSMUST00000195103513172aaENSMUSP00000141246
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.
Cryz-004ENSMUST0000014064447398aaENSMUSP00000115146
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YWU6 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Cryz-002ENSMUST000001845372606223aaENSMUSP00000139387
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-D3YUG9 D3YWU6 D3Z2X0
D3Z4Q4 V9GXY8
-TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Cryz-007ENSMUST00000135723795No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Cryz-008ENSMUST000001952923476No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Gene-based displays