Description

fragile X mental retardation gene 1, autosomal homolog [Source:MGI Symbol;Acc:MGI:104860]

Location
INSDC coordinates

chromosome:GRCm38:CM000996.2:34019943:34070322:1

About this gene

This gene has 9 transcripts (splice variants), 68 orthologues, 2 paralogues and is a member of 3 Ensembl protein families.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Fxr1-009ENSMUST000000016202459677aaENSMUSP00000001620
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS50891Q61584 NM_001113188
NP_001106659
TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P2

PRINCIPAL2 - APPRIS candidate principal isoform (CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Fxr1-001ENSMUST000002003923014539aaENSMUSP00000143392
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
--NM_008053
NP_032079
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Fxr1-002ENSMUST000001976942129621aaENSMUSP00000142441
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
--NM_001113189
NP_001106660
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT1

ALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Fxr1-005ENSMUST000001980512127568aaENSMUSP00000142847
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Fxr1-003ENSMUST000001673541986454aaENSMUSP00000130216
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q61584 -TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Fxr1-010ENSMUST00000197853646133aaENSMUSP00000143614
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
Fxr1-007ENSMUST00000200086215854aaENSMUSP00000143562
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
---
Fxr1-006ENSMUST000002004252484No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Fxr1-008ENSMUST00000196519651No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Gene-based displays