Description

syntaxin 16 [Source:MGI Symbol;Acc:MGI:1923396]

INSDC coordinates

chromosome:GRCm38:CM000995.2:174076308:174099771:1

About this gene

This gene has 6 transcripts (splice variants), 63 orthologues, is a member of 2 Ensembl protein families and is associated with 3 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Stx16-001ENSMUST000000879083865326aaENSMUSP00000085218
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS17147Q8BVI5 NM_001102424
NM_172675
NP_001095894
NP_766263
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P2

PRINCIPAL2 - APPRIS candidate principal isoform (CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Stx16-201ENSMUST000000446383731327aaENSMUSP00000039543
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F6X4N5 NM_001102423
NM_001102425
NP_001095893
NP_001095895
TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Stx16-005ENSMUST00000156054773258aaENSMUSP00000116618
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F7CJY7 -CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Stx16-003ENSMUST00000147038647164aaENSMUSP00000120279
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B7ZCB8 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Stx16-004ENSMUST0000015500035689aaENSMUSP00000119952
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B7ZCB9 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Stx16-002ENSMUST0000013487623533aaENSMUSP00000123275
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B7ZCB7 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays