Description

collagen, type V, alpha 1 [Source:MGI Symbol;Acc:MGI:88457]

Location
INSDC coordinates

chromosome:GRCm38:CM000995.2:27886425:28039514:1

About this gene

This gene has 2 transcripts (splice variants), 58 orthologues, 17 paralogues and is a member of 1 Ensembl protein family.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Col5a1-001ENSMUST0000002828084061838aaENSMUSP00000028280
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS15831B1AWB9 O88207 NM_015734
NP_056549
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Col5a1-002ENSMUST000001454231049349aaENSMUSP00000123532
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A3KGE7 -CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays