Description

LIM homeobox transcription factor 1 alpha [Source:MGI Symbol;Acc:MGI:1888519]

INSDC coordinates

chromosome:GRCm38:CM000994.2:167689237:167848741:1

About this gene

This gene has 2 transcripts (splice variants), 67 orthologues, 11 paralogues and is a member of 1 Ensembl protein family.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Lmx1a-001ENSMUST000000280033347382aaENSMUSP00000028003
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS15460Q543W2 Q9JKU8 NM_033652
NP_387501
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Lmx1a-002ENSMUST000001113773200382aaENSMUSP00000107008
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS15460Q543W2 Q9JKU8 -TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Gene-based displays