Description

syntaxin 6 [Source:MGI Symbol;Acc:MGI:1926235]

INSDC coordinates

chromosome:GRCm38:CM000994.2:155158715:155208256:1

About this gene

This gene has 10 transcripts (splice variants), 67 orthologues and is a member of 2 Ensembl protein families.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Stx6-001ENSMUST000000277434589255aaENSMUSP00000027743
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS35741Q9JKK1 NM_021433
NP_067408
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Stx6-002ENSMUST00000192690128991aaENSMUSP00000141362
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A0A6YW23 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
Stx6-003ENSMUST00000195302955255aaENSMUSP00000142089
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q9JKK1 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Stx6-009ENSMUST00000193059934199aaENSMUSP00000141976
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-A0A0A6YXG0 -
Stx6-010ENSMUST00000192519750No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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Stx6-007ENSMUST00000194158711No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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Stx6-004ENSMUST000001920914029No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Stx6-005ENSMUST00000195693870No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Stx6-006ENSMUST00000192311685No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Stx6-008ENSMUST00000191769405No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Gene-based displays