Description

nuclear receptor subfamily 5, group A, member 2 [Source:MGI Symbol;Acc:MGI:1346834]

INSDC coordinates

chromosome:GRCm38:CM000994.2:136842571:136960448:1

About this gene

This gene has 6 transcripts (splice variants), 67 orthologues, 2 paralogues and is a member of 1 Ensembl protein family.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Nr5a2-001ENSMUST000000276494733560aaENSMUSP00000027649
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS15328P45448 NM_030676
NP_109601
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P3

PRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Nr5a2-004ENSMUST000001681263446499aaENSMUSP00000129071
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS48382Q1WLP7 -TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Nr5a2-003ENSMUST000001929291756499aaENSMUSP00000141495
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS48382Q1WLP7 NM_001159769
NP_001153241
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Nr5a2-002ENSMUST000001923571859539aaENSMUSP00000142219
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A0A6YY04 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT1

ALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Nr5a2-005ENSMUST00000195428679136aaENSMUSP00000141645
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A0A6YWQ4 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Nr5a2-006ENSMUST00000192587621No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Gene-based displays