Description

sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C [Source:MGI Symbol;Acc:MGI:109252]

Location
INSDC coordinates

chromosome:GRCm38:CM000994.2:36548639:36558349:1

About this gene

This gene has 8 transcripts (splice variants), 52 orthologues, 12 paralogues and is a member of 3 Ensembl protein families.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Sema4c-006ENSMUST000001916423892834aaENSMUSP00000142284
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS48240Q64151 NM_001304330
NP_001291259
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Sema4c-003ENSMUST000001916773779834aaENSMUSP00000141263
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS48240Q64151 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Sema4c-001ENSMUST000001149913773834aaENSMUSP00000110643
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS48240Q64151 NM_001126047
NP_001119519
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Sema4c-002ENSMUST000001956203640834aaENSMUSP00000141527
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS48240Q64151 NM_001304329
NP_001291258
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Sema4c-004ENSMUST0000019533950836aaENSMUSP00000141833
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A0A6YX48 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Sema4c-005ENSMUST0000019338245237aaENSMUSP00000142034
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A0A6YXK9 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Sema4c-008ENSMUST00000191785745No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Sema4c-007ENSMUST00000195160618No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Gene-based displays