Description

jade family PHD finger 1 [Source:MGI Symbol;Acc:MGI:1925835]

Location
INSDC coordinates

chromosome:GRCm38:CM000996.2:41555731:41616864:1

Transcripts

This gene has 14 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
Jade1-002ENSMUST000001637645584834 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS17331Q6UZ80 Q6ZPI0 NM_172303
NP_758507
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CI1APPRIS candidate principal isoform (longest coding sequence)
Glossary entry for APPRIS
APPRIS website
Jade1-001ENSMUST000000268655481834 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS17331Q6UZ80 Q6ZPI0 NM_001130184
NP_001123656
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CI1APPRIS candidate principal isoform (longest coding sequence)
Glossary entry for APPRIS
APPRIS website
Jade1-003ENSMUST000001680864790834 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS17331Q6UZ80 Q6ZPI0 NM_001130186
NP_001123658
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CI1APPRIS candidate principal isoform (longest coding sequence)
Glossary entry for APPRIS
APPRIS website
Jade1-005ENSMUST000001707112896834 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS17331Q6UZ80 Q6ZPI0 NM_001130185
NP_001123657
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CI1APPRIS candidate principal isoform (longest coding sequence)
Glossary entry for APPRIS
APPRIS website
Jade1-004ENSMUST000001919523327510 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q6UZ80 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CIAPPRIS candidate principal isoform
Glossary entry for APPRIS
APPRIS website
Jade1-007ENSMUST00000195846543152 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q6UZ80 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Jade1-006ENSMUST00000194181542104 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q6UZ80 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Jade1-012ENSMUST00000192451491164 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.
Jade1-014ENSMUST00000192300449No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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Jade1-008ENSMUST00000193080434No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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Jade1-009ENSMUST00000194348382No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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Jade1-013ENSMUST00000191921774No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Jade1-010ENSMUST00000195322718No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Jade1-011ENSMUST00000195200487No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Gene-based displays