Description

jade family PHD finger 1 [Source:MGI Symbol;Acc:MGI:1925835]

Location
INSDC coordinates

chromosome:GRCm38:CM000996.2:41555731:41616864:1

About this gene

This gene has 14 transcripts (splice variants), 64 orthologues, 8 paralogues and is a member of 1 Ensembl protein family.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Jade1-002ENSMUST000001637645584834aaENSMUSP00000128152
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS17331Q6ZPI0 NM_172303
NP_758507
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P2

PRINCIPAL2 - APPRIS candidate principal isoform (CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Jade1-001ENSMUST000000268655481834aaENSMUSP00000026865
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS17331Q6ZPI0 NM_001130184
NP_001123656
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P2

PRINCIPAL2 - APPRIS candidate principal isoform (CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Jade1-003ENSMUST000001680864790834aaENSMUSP00000131441
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS17331Q6ZPI0 NM_001130186
NP_001123658
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P2

PRINCIPAL2 - APPRIS candidate principal isoform (CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Jade1-005ENSMUST000001707112896834aaENSMUSP00000127113
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS17331Q6ZPI0 NM_001130185
NP_001123657
TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P2

PRINCIPAL2 - APPRIS candidate principal isoform (CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Jade1-004ENSMUST000001919523327510aaENSMUSP00000141499
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q6ZPI0 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Jade1-007ENSMUST00000195846543152aaENSMUSP00000141711
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A0A6YWV0 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Jade1-006ENSMUST00000194181542104aaENSMUSP00000141670
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A0A6YWS2 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Jade1-012ENSMUST00000192451491164aaENSMUSP00000142142
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A0A6YXU2 -CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.
Jade1-014ENSMUST00000192300449No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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Jade1-008ENSMUST00000193080434No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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Jade1-009ENSMUST00000194348382No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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Jade1-013ENSMUST00000191921774No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Jade1-010ENSMUST00000195322718No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Jade1-011ENSMUST00000195200487No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Gene-based displays