Description

orthodenticle homolog 2 [Source:MGI Symbol;Acc:MGI:97451]

Location
INSDC coordinates

chromosome:GRCm38:CM001007.2:48657679:48667644:1

About this gene

This gene has 8 transcripts (splice variants), 68 orthologues, 12 paralogues and is a member of 3 Ensembl protein families.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Otx2-001ENSMUST000001185782284289aaENSMUSP00000113690
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS49473Q8VD35 NM_001286482
NM_001286483
NP_001273411
NP_001273412
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Otx2-003ENSMUST000001220091737289aaENSMUSP00000113930
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS49473Q8VD35 NM_144841
NP_659090
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Otx2-002ENSMUST000001190701708297aaENSMUSP00000112532
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS70575Q8R0B5 NM_001286481
NP_001273410
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Otx2-004ENSMUST000001520181033207aaENSMUSP00000123454
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YZ94 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Otx2-005ENSMUST00000135279737154aaENSMUSP00000123046
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YUN4 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Otx2-007ENSMUST0000014446572398aaENSMUSP00000116630
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3Z4G2 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Otx2-006ENSMUST0000013347961863aaENSMUSP00000122200
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3Z7L5 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Otx2-008ENSMUST0000011973951646aaENSMUSP00000113586
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3Z581 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays