Description

patched homolog 1 [Source:MGI Symbol;Acc:MGI:105373]

Location
INSDC coordinates

chromosome:GRCm38:CM001006.2:63508328:63573598:1

About this gene

This gene has 8 transcripts (splice variants), 70 orthologues, 4 paralogues, is a member of 1 Ensembl protein family and is associated with 2 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Ptch1-001ENSMUST0000002192177251434aaENSMUSP00000021921
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS26592Q3TM50 Q3TQB0 Q5R1U4
Q5TLE8 Q61115
NM_008957
NP_032983
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI2APPRIS candidate principal isoform (CCDS)
Glossary entry for APPRIS
APPRIS website
Ptch1-005ENSMUST0000019215570021297aaENSMUSP00000141489
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q3TM50 Q3TQB0 Q5R1U4
-GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website
Ptch1-003ENSMUST000001951061123326aaENSMUSP00000141298
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q5R1U4 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Ptch1-004ENSMUST00000193953849174aaENSMUSP00000142036
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q5R1U4 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Ptch1-006ENSMUST00000195756809174aaENSMUSP00000141990
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q5R1U4 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Ptch1-002ENSMUST000001946637657581aaENSMUSP00000141766
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-Q5R1U4 Q5R252 -
Ptch1-007ENSMUST000001952583418426aaENSMUSP00000141309
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-Q3LG17 Q5R1U4 -
Ptch1-009ENSMUST00000194022305No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Gene-based displays