Description

general transcription factor II A, 1 [Source:MGI Symbol;Acc:MGI:1933277]

Location
INSDC coordinates

chromosome:GRCm38:CM001005.2:91555916:91590487:1

About this gene

This gene has 3 transcripts (splice variants), 67 orthologues, 4 paralogues, is a member of 1 Ensembl protein family and is associated with 3 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Gtf2a1-001ENSMUST000000213455410378aaENSMUSP00000021345
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS26089Q99PM3 NM_031391
NP_113568
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Gtf2a1-002ENSMUST000000633142265339aaENSMUSP00000068562
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS49136Q149E9 NM_175335
NP_780544
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Gtf2a1-003ENSMUST00000163693282No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays