Description

IKAROS family zinc finger 1 [Source:MGI Symbol;Acc:MGI:1342540]

Location
INSDC coordinates

chromosome:GRCm38:CM001004.2:11685003:11772926:1

About this gene

This gene has 6 transcripts (splice variants), 65 orthologues, 5 paralogues and is a member of 3 Ensembl protein families.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Ikzf1-201ENSMUST000000767005163515aaENSMUSP00000075992
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS24436G5E8H3 NM_001025597
NM_001301863
NP_001020768
NP_001288792
NP_001288797
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Ikzf1-003ENSMUST000000187981542428aaENSMUSP00000018798
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS24437Q5SWU0 NM_009578
NP_001288794
NP_033604
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Ikzf1-002ENSMUST000000654334697535aaENSMUSP00000067372
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q5SWT9 -TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Ikzf1-004ENSMUST00000048122911198aaENSMUSP00000046974
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q8C9X3 -TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Ikzf1-001ENSMUST0000012605844679aaENSMUSP00000119960
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q5SWT7 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Ikzf1-005ENSMUST0000014143624219aaENSMUSP00000117958
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q5SWT6 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays