Description

solute carrier family 38, member 3 [Source:MGI Symbol;Acc:MGI:1923507]

INSDC coordinates

chromosome:GRCm38:CM001002.2:107650634:107669530:1

About this gene

This gene has 14 transcripts (splice variants), 75 orthologues, 7 paralogues and is a member of 1 Ensembl protein family.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Slc38a3-003ENSMUST000001678683151505aaENSMUSP00000130414
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS23503Q9DCP2 -TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Slc38a3-004ENSMUST000000102082585505aaENSMUSP00000010208
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS23503Q9DCP2 NM_023805
NP_076294
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Slc38a3-002ENSMUST000001939322463505aaENSMUSP00000142087
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS23503Q9DCP2 NM_001199217
NP_001186146
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Slc38a3-001ENSMUST000001775672456505aaENSMUSP00000137561
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS23503Q9DCP2 NM_001199218
NP_001186147
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Slc38a3-007ENSMUST00000192323696182aaENSMUSP00000141850
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A0A6YX60 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Slc38a3-010ENSMUST00000192990691154aaENSMUSP00000141528
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A0A6YWF5 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Slc38a3-008ENSMUST0000019584363899aaENSMUSP00000141552
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A0A6YWH4 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Slc38a3-014ENSMUST00000195739703160aaENSMUSP00000141484
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-A0A0A6YWC0 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
Slc38a3-013ENSMUST00000192211641125aaENSMUSP00000141569
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-A0A0A6YWI8 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
Slc38a3-012ENSMUST00000191923731No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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Slc38a3-006ENSMUST00000193495624No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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Slc38a3-005ENSMUST000001948953133No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Slc38a3-009ENSMUST00000195033780No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Slc38a3-011ENSMUST00000194230614No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Gene-based displays