Description

collagen, type XVIII, alpha 1 [Source:MGI Symbol;Acc:MGI:88451]

Location
INSDC coordinates

chromosome:GRCm38:CM001003.2:77052178:77166548:1

Transcripts

This gene has 5 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
Col18a1-001ENSMUST0000008165450631315 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS23953D3Z556 P39061 NM_009929
NP_034059
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Col18a1-003ENSMUST0000010540947911527 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS48604D3Z556 P39061 NM_001109991
NP_001103461
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Col18a1-201ENSMUST0000007275563381774 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3Z556 D3Z5C2 E9QPX1
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Col18a1-002ENSMUST000001497441956562 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3Z5C2 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Col18a1-004ENSMUST00000156009717161 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3Z556 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays