Description

collagen, type XVIII, alpha 1 [Source:MGI Symbol;Acc:MGI:88451]

Location
INSDC coordinates

chromosome:GRCm38:CM001003.2:77052178:77166548:1

About this gene

This gene has 5 transcripts (splice variants), 73 orthologues, 1 paralogue, is a member of 1 Ensembl protein family and is associated with 2 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Col18a1-001ENSMUST0000008165450631315aaENSMUSP00000080358
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS23953P39061 NM_009929
NP_034059
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Col18a1-003ENSMUST0000010540947911527aaENSMUSP00000101049
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS48604P39061 NM_001109991
NP_001103461
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Col18a1-201ENSMUST0000007275563381774aaENSMUSP00000072538
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9QPX1 -TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Col18a1-002ENSMUST000001497441956562aaENSMUSP00000116418
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3Z5C2 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Col18a1-004ENSMUST00000156009717161aaENSMUSP00000122580
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3Z556 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays