Description

apolipoprotein H [Source:MGI Symbol;Acc:MGI:88058]

INSDC coordinates

chromosome:GRCm38:CM001004.2:108343354:108414396:1

About this gene

This gene has 4 transcripts (splice variants), 74 orthologues, 13 paralogues and is a member of 3 Ensembl protein families.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Apoh-001ENSMUST000000000491190345aaENSMUSP00000000049
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS25574Q01339 NM_013475
NP_038503
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Apoh-004ENSMUST00000152958731154aaENSMUSP00000114214
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-I7HJR3 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Apoh-003ENSMUST0000014605037433aaENSMUSP00000123486
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-J3JS85 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Apoh-002ENSMUST0000013338336751aaENSMUSP00000115516
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-I7HPW5 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays