Gene: Ift27 ENSMUSG00000016637

Description

intraflagellar transport 27 [Source:MGI Symbol;Acc:MGI:1914292]

Gene Synonyms

2600013G09Rik, Rabl4

Location

Chromosome 15: 78,043,663-78,058,307 reverse strand.

GRCm39:CM001008.3

About this gene

This gene has 5 transcripts (splice variants), 190 orthologues, 62 paralogues and is associated with 41 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000016781.8	Ift27-201	1013	186aa	ENSMUSP00000016781.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37131	Q9D0P8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000230844.2	Ift27-204	760	163aa	ENSMUSP00000155127.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VHI2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000229476.2	Ift27-203	375	99aa	ENSMUSP00000155736.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VI57	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000229417.2	Ift27-202	483	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000231069.2	Ift27-205	1569	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Gene: Ift27 ENSMUSG00000016637

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Gene: Ift27 ENSMUSG00000016637

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