Summary
- Splice variants
- Transcript comparison
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Gene: 4930554C24Rik ENSMUSG00000099724

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Description

RIKEN cDNA 4930554C24 gene [Source:MGI Symbol;Acc:MGI:1922503]

Location

Chromosome 9: 84,656,413-84,744,967 forward strand.

GRCm39:CM001002.3

About this gene

This gene has 15 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000217202.2	4930554C24Rik-205	895	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000216019.3	4930554C24Rik-203	1735	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000352682.1	4930554C24Rik-214	1423	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000278542.1	4930554C24Rik-207	1371	No protein	-	lncRNA		-
ENSMUST00000216802.2	4930554C24Rik-204	1346	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000278543.1	4930554C24Rik-208	1270	No protein	-	lncRNA		-
ENSMUST00000278544.1	4930554C24Rik-209	1151	No protein	-	lncRNA		-
ENSMUST00000187735.3	4930554C24Rik-201	1116	No protein	-	lncRNA		TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000278541.1	4930554C24Rik-206	1064	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000213542.2	4930554C24Rik-202	1027	No protein	-	lncRNA		TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000278546.1	4930554C24Rik-211	965	No protein	-	lncRNA		-
ENSMUST00000278545.1	4930554C24Rik-210	898	No protein	-	lncRNA		-
ENSMUST00000278548.1	4930554C24Rik-213	773	No protein	-	lncRNA		-
ENSMUST00000352683.1	4930554C24Rik-215	751	No protein	-	lncRNA		-
ENSMUST00000278547.1	4930554C24Rik-212	546	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data