Description

SLAM family member 6 [Source:MGI Symbol;Acc:MGI:1353620]

INSDC coordinates

chromosome:GRCm38:CM000994.2:171917515:171953170:1

About this gene

This gene has 7 transcripts (splice variants), 48 orthologues, 4 paralogues and is a member of 2 Ensembl protein families.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Slamf6-001ENSMUST000001713302485331aaENSMUSP00000130610
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS15504Q18PG5 Q9ET39 NM_030710
NP_109635
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P2

PRINCIPAL2 - APPRIS candidate principal isoform (CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Slamf6-002ENSMUST000001956565729351aaENSMUSP00000141448
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q18PJ0 Q9ET39 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Slamf6-003ENSMUST00000194561984327aaENSMUSP00000141944
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C6ESQ1 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Slamf6-006ENSMUST0000019418234655aaENSMUSP00000142242
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A0A6YY21 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Slamf6-007ENSMUST00000195206444No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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Slamf6-005ENSMUST000001933112920No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Slamf6-004ENSMUST00000194924998No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Stable ID

ENSMUSG00000015314.7

Status

Current

Latest Version

ENSMUSG00000015314.7

Release: 80 (current)

Assembly: GRCm38

Database: mus_musculus_core_80_38

Associated archived IDs for this stable ID version

No associated IDs found

Gene-based displays