Description

filaggrin [Source:MGI Symbol;Acc:MGI:95553]

Location
INSDC coordinates

chromosome:GRCm38:CM000996.2:93273541:93293686:1

About this gene

This gene has 3 transcripts (splice variants), 1 orthologue, 6 paralogues and is a member of 2 Ensembl protein families.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtFlags
Flg-001ENSMUST000000507581488336aaENSMUSP00000142294
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A0A6YY62 CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:NA

Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Flg-002ENSMUST000001483111124357aaENSMUSP00000141768
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A0A6YXI5 CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

APPRIS P5

PRINCIPAL5 - APPRIS candidate principal isoform (longest coding sequence).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Flg-201ENSMUST000001803081076357aaENSMUSP00000142003
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A0A6YXI5 TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P5

PRINCIPAL5 - APPRIS candidate principal isoform (longest coding sequence).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Gene-based displays