Description

synaptic Ras GTPase activating protein 1 homolog (rat) [Source:MGI Symbol;Acc:MGI:3039785]

Location
INSDC coordinates

chromosome:GRCm38:CM001010.2:26941384:26972434:1

About this gene

This gene has 4 transcripts (splice variants), 69 orthologues, 8 paralogues and is a member of 1 Ensembl protein family.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Syngap1-001ENSMUST0000019459858801340aaENSMUSP00000141686
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS59625F6SEU4 NM_001281491
NP_001268420
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Syngap1-003ENSMUST0000008128543151281aaENSMUSP00000080038
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Syngap1-201ENSMUST0000017793239271308aaENSMUSP00000137587
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-J3QQ18 -TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Syngap1-002ENSMUST0000019320045341281aaENSMUSP00000141245
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-A0A0A6YVS6 -

Gene-based displays