Description

chimerin 1 [Source:MGI Symbol;Acc:MGI:1915674]

Location
INSDC coordinates

chromosome:GRCm38:CM000995.2:73610660:73775346:1

About this gene

This gene has 10 transcripts (splice variants), 69 orthologues, 14 paralogues and is a member of 2 Ensembl protein families.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Chn1-001ENSMUST000001120244050459aaENSMUSP00000107655
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS50608A7VK14 B2FDI0 B2FDI1
B2FDI2 Q91V57
NM_001113246
NP_001106717
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Chn1-202ENSMUST000001800454050210aaENSMUSP00000137106
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS38145A7VK14 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Chn1-201ENSMUST000001661993876401aaENSMUSP00000128847
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS50607A7VK13 B2FDI2 NM_001166603
NP_001160075
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Chn1-002ENSMUST000001026773760334aaENSMUSP00000099738
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS16133A7VK14 B2FDI0 B2FDI1
Q91V57
NM_001166604
NM_175752
NP_001160076
NP_786928
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Chn1-003ENSMUST000000705791023210aaENSMUSP00000070301
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS38145A7VK14 NM_029716
NP_083992
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Chn1-007ENSMUST0000015425871295aaENSMUSP00000116417
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B2FDI0 B2FDI1 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Chn1-005ENSMUST00000135904631128aaENSMUSP00000115029
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B2FDI2 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Chn1-008ENSMUST0000013695341381aaENSMUSP00000123551
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B2FDI1 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Chn1-004ENSMUST0000013925288187aaENSMUSP00000123312
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-D6RCX8 -TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Chn1-006ENSMUST0000012445064329aaENSMUSP00000116708
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays