Description

high mobility group AT-hook 1 [Source:MGI Symbol;Acc:MGI:96160]

Location
INSDC coordinates

chromosome:GRCm38:CM001010.2:27556620:27563674:1

Transcripts

This gene has 6 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
Hmga1-003ENSMUST00000118570189896 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS50044P17095 Q3TVP0 NM_001166537
NM_001166539
NP_001160009
NP_001160011
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CIAPPRIS candidate principal isoform
Glossary entry for APPRIS
APPRIS website
Hmga1-001ENSMUST000001176001635107 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS28564P17095 Q3TE85 Q566K0
NM_001025427
NM_001039356
NM_001166535
NM_001166536
NM_001166543
NM_001166544
NM_001166545
NM_001166546
NP_001020598
NP_001034445
NP_001160007
NP_001160008
NP_001160015
NP_001160016
NP_001160017
NP_001160018
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CI1APPRIS candidate principal isoform (longest coding sequence)
Glossary entry for APPRIS
APPRIS website
Hmga1-002ENSMUST00000114888159396 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS50044P17095 Q3TVP0 NM_001166540
NM_001166541
NM_001166542
NP_001160012
NP_001160013
NP_001160014
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CIAPPRIS candidate principal isoform
Glossary entry for APPRIS
APPRIS website
Hmga1-004ENSMUST000001172541328107 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS28564P17095 Q3TE85 Q566K0
NM_016660
NP_057869
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CI1APPRIS candidate principal isoform (longest coding sequence)
Glossary entry for APPRIS
APPRIS website
Hmga1-006ENSMUST000001194861003107 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS28564P17095 Q3TE85 Q566K0
-TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CI1APPRIS candidate principal isoform (longest coding sequence)
Glossary entry for APPRIS
APPRIS website
Hmga1-005ENSMUST00000118599529107 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS28564P17095 Q3TE85 Q566K0
-TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CI1APPRIS candidate principal isoform (longest coding sequence)
Glossary entry for APPRIS
APPRIS website

Gene-based displays