Description

contactin associated protein-like 2 [Source:MGI Symbol;Acc:MGI:1914047]

Location
INSDC coordinates

chromosome:GRCm38:CM000999.2:45060061:47304213:1

About this gene

This gene has 5 transcripts (splice variants), 81 orthologues, 9 paralogues and is a member of 1 Ensembl protein family.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Cntnap2-001ENSMUST0000011464198271332aaENSMUSP00000110288
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS39475E9QNF7 NM_001004357
NP_001004357
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Cntnap2-004ENSMUST000000608391540108aaENSMUSP00000056299
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS20094Q3SYI6 Q9CPW0 -TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Cntnap2-002ENSMUST000001991006279108aaENSMUSP00000143528
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q3SYI6 NM_025771
NP_080047
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Cntnap2-003ENSMUST0000015073734079aaENSMUSP00000142656
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Cntnap2-005ENSMUST00000196561622No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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Gene-based displays