Description

stimulated by retinoic acid gene 6 [Source:MGI Symbol;Acc:MGI:107742]

Location
INSDC coordinates

chromosome:GRCm38:CM001002.2:58063788:58153996:1

About this gene

This gene has 14 transcripts (splice variants), 66 orthologues, 1 paralogue and is a member of 2 Ensembl protein families.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Stra6-202ENSMUST000001703973077670aaENSMUSP00000130232
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS23236D3YUA2 D3YVZ1 D3YXW9
E9PZN4 E9PZT7 E9Q283
E9Q3G2 E9Q9S7 E9QAQ2
O70491
NM_001162476
NP_001155948
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI2APPRIS candidate principal isoform (CCDS)
Glossary entry for APPRIS
APPRIS website
Stra6-002ENSMUST000000348802993670aaENSMUSP00000034880
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS23236D3YUA2 D3YVZ1 D3YXW9
E9PZN4 E9PZT7 E9Q283
E9Q3G2 E9Q9S7 E9QAQ2
O70491
NM_009291
NP_033317
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI2APPRIS candidate principal isoform (CCDS)
Glossary entry for APPRIS
APPRIS website
Stra6-201ENSMUST000001674792871670aaENSMUSP00000128417
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS23236D3YUA2 D3YVZ1 D3YXW9
E9PZN4 E9PZT7 E9Q283
E9Q3G2 E9Q9S7 E9QAQ2
O70491
NM_001162479
NP_001155951
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI2APPRIS candidate principal isoform (CCDS)
Glossary entry for APPRIS
APPRIS website
Stra6-001ENSMUST000000856772725670aaENSMUSP00000082820
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS23236D3YUA2 D3YVZ1 D3YXW9
E9PZN4 E9PZT7 E9Q283
E9Q3G2 E9Q9S7 E9QAQ2
O70491
NM_001162475
NP_001155947
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI2APPRIS candidate principal isoform (CCDS)
Glossary entry for APPRIS
APPRIS website
Stra6-007ENSMUST00000147134877162aaENSMUSP00000115315
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YUA2 D3YVZ1 D3YXW9
E9PZN4 E9Q3G2
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website
Stra6-006ENSMUST00000134955717190aaENSMUSP00000117280
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YUA2 D3YVZ1 D3YXW9
E9PZN4 E9PZT7 E9Q283
E9Q3G2 E9QAQ2
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website
Stra6-012ENSMUST00000136154712199aaENSMUSP00000119062
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YUA2 D3YVZ1 D3YXW9
E9PZN4 E9PZT7 E9Q283
E9Q3G2 E9Q9S7 E9QAQ2
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website
Stra6-009ENSMUST00000150820687168aaENSMUSP00000122373
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YUA2 D3YVZ1 D3YXW9
E9PZN4 E9Q283 E9Q3G2
E9QAQ2
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website
Stra6-008ENSMUST00000128378630164aaENSMUSP00000115511
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YUA2 D3YVZ1 D3YXW9
E9PZN4 E9Q283 E9Q3G2
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website
Stra6-004ENSMUST00000133287583139aaENSMUSP00000114346
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YUA2 D3YVZ1 D3YXW9
E9PZN4
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website
Stra6-005ENSMUST0000013633850999aaENSMUSP00000115314
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YUA2 D3YVZ1 D3YXW9
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website
Stra6-010ENSMUST0000013445047164aaENSMUSP00000118242
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YXW9 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website
Stra6-011ENSMUST0000012802139887aaENSMUSP00000117832
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YVZ1 D3YXW9 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website
Stra6-003ENSMUST000001458862001No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays