Description

sodium channel, nonvoltage-gated 1 alpha [Source:MGI Symbol;Acc:MGI:101782]

INSDC coordinates

chromosome:GRCm38:CM000999.2:125320659:125344943:1

Transcripts



This gene has 7 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
Scnn1a-001ENSMUST000000814403499700 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS39641H3BJC3 H3BKC4 H3BKP2
H3BLI2 Q3USG4 Q61180
Q80YC1 Q924B6
NM_011324
NP_035454
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [04-09-2014]
Glossary entry for APPRIS
APPRIS website
Scnn1a-003ENSMUST000001761103494674 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H3BJC3 H3BKC4 H3BKP2
H3BLI2 Q80YC1
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Scnn1a-002ENSMUST000001766553354593 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H3BKC4 H3BLI2 Q80YC1
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Scnn1a-004ENSMUST000001773292807674 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H3BJC3 H3BKC4 H3BKP2
H3BLI2 Q80YC1
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Scnn1a-005ENSMUST000001764422323591 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H3BKC4 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Scnn1a-006ENSMUST00000176365560143 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H3BKP2 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Scnn1a-007ENSMUST000001759662154275 aa
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-H3BKP2 H3BKW1 -TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays