Description

SPARC related modular calcium binding 1 [Source:MGI Symbol;Acc:MGI:1929878]

Location
INSDC coordinates

chromosome:GRCm38:CM001005.2:81026808:81186414:1

About this gene

This gene has 3 transcripts (splice variants), 68 orthologues, 1 paralogue, is a member of 1 Ensembl protein family and is associated with 3 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Smoc1-001ENSMUST000001103473496463aaENSMUSP00000105976
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS49102Q8BLY1 NM_001146217
NP_001139689
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website
Smoc1-002ENSMUST000000215643439452aaENSMUSP00000021564
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS26017E9QKW2 NM_022316
NP_071711
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI3APPRIS candidate principal isoform (earliest CCDS)
Glossary entry for APPRIS
APPRIS website
Smoc1-003ENSMUST000001293623385434aaENSMUSP00000122858
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3Z3A3 -TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT1APPRIS candidate principal isoform that is conserved in at least three tested non-primate species
Glossary entry for APPRIS
APPRIS website

Gene-based displays