Description

calpain 5 [Source:MGI Symbol;Acc:MGI:1100859]

Location
INSDC coordinates

chromosome:GRCm38:CM001000.2:98121559:98178274:1

About this gene

This gene has 5 transcripts (splice variants), 67 orthologues, 10 paralogues, is a member of 3 Ensembl protein families and is associated with 2 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Capn5-001ENSMUST000000409714498640aaENSMUSP00000048183
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS21465D3YU84 O08688 Q3TPL4
Q3UTF3
NM_001301250
NM_007602
NP_001288179
NP_031628
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Capn5-002ENSMUST000001071122232640aaENSMUSP00000102729
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS21465D3YU84 O08688 Q3TPL4
Q3UTF3
-TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Capn5-003ENSMUST0000012943044027aaENSMUSP00000121200
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YU84 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Capn5-004ENSMUST0000015505638246aaENSMUSP00000116697
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YU84 D3Z432 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Capn5-005ENSMUST00000134638668No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

Gene-based displays