Active tracks

Search results

Favourite tracks

Sequence and assembly

  • Contigs

Genes and transcripts

Enable/disable all Genes
  • Comprehensive Gene Annotations from GENCODE M6
    This track comprises multiple analyses; Annotation produced by the Ensembl genebuild and projected to the alternate locus via a mapping from the primary assembly.; Non-coding RNAs (ncRNAs) predicted using sequences from RFAM and miRBase. See article. These were projected to the alternate locus via a mapping from the primary assembly.; Immunoglobulin (Ig) and T-cell receptor (TcR) annotation imported from the manually curated IG gene set from the Havana project.; Immunoglobulin (Ig) and T-cell receptor (TcR) annotation from Ensembl and Havana. Havana annotation was imported from the Havana project's manually curated IG gene set. Ensembl annotation was imported from the IMGT database using Exonerate. Click here for more details about the Ensembl annotation.; Manual annotation (determined on a case-by-case basis) from the Havana project, projected to the alternate locus via a mapping from the primary assembly.; Annotation produced by the Ensembl genebuild.; Long intergenic non-coding RNAs (lincRNAs) were annotated by the Ensembl lincRNA annotation pipeline and projected to the alternate locus via a mapping from the primary assembly.; Mitochondrial gene models imported from Genbank.; Long intergenic non-coding RNAs (lincRNAs) containing both Ensembl lincRNA transcripts annotated by the Ensembl lincRNA annotation pipeline and non-coding transcripts from Havana manual curation.; Non-coding RNAs (ncRNAs) predicted using sequences from RFAM and miRBase. See article.; Annotation produced by aligning human cDNA sequences to the genome using Exonerate's cdna2genome model, which utilises annotation identifying the coding regions of the cDNA sequences, along with protein evidence from UniProtKB, from various species, aligned to the genome using GeneWise. This annotation is used where there is no manual annotation and annotation could not be projected from the primary assembly.; Immunoglobulin (Ig) and T-cell receptor (TcR) annotation was imported from the IMGT database using Exonerate.; Annotation for this gene includes both automatic annotation from Ensembl and Havana manual curation, see article.; Long intergenic non-coding RNAs (lincRNAs) were annotated by the Ensembl lincRNA annotation pipeline.; Annotation for this gene includes both automatic annotation from Ensembl and Havana manual curation, see article. This was projected to the alternate locus via a mapping from the primary assembly.; Manual annotation (determined on a case-by-case basis) from the Havana project.
Configure matrix columns for RNASeq models

    Prediction transcripts

      Variation

      Enable/disable all Sequence variants

        Failed variants

          Enable/disable all Phenotype annotations
            Enable/disable all Structural variants

              Regulation

              Enable/disable all Regulatory features
                Enable/disable all Segmentation features
                  Configure matrix columns for Open chromatin & TFBS
                    Configure matrix columns for Histones & polymerases
                      Enable/disable all DNA Methylation
                        Enable/disable all Other regulatory regions

                          mRNA and protein alignments

                          Enable/disable all mRNA and protein alignments

                            Information and decorations

                            Enable/disable all tracks
                            • Scale bar
                              Shows the scalebar
                            • Ruler
                              Shows the length of the region being displayed
                            • Disabled track summary
                              Show counts of number of tracks turned off by the user
                            • Information
                              Details of the region shown in the image
                            • Variation Legend
                            • Structural Variation Legend
                            • Gene Legend
                            • Alignment Difference Legend
                            • Regulation Legend
                            • Methylation Legend
                            • Display in-track labels
                            • Highlight current feature
                            You have no favourite tracks. Use the star icon to add tracks to your favourites

                            Track order

                              Display options

                              Save configuration

                              Or

                              Looking for more data? See our Track Hub list for external sources of annotation

                              Key

                              • Track style
                              • Forward strand
                              • Reverse strand
                              • Favourite track
                              • Track information
                              • External data
                              • User-added track

                              Please note that the content of external tracks is not the responsibility of the Ensembl project.

                              URL-based or DAS tracks may either slow down your ensembl browsing experience OR may be unavailable as these are served and stored from other servers elsewhere on the Internet.