Description
strawberry notch 1 [Source:MGI Symbol;Acc:MGI:2384298]
Location
Chromosome 5: 117,367,400-117,423,928 reverse strand.
CAROLI_EIJ_v1.1:LT608240.1
About this gene
This gene has 18 transcripts (splice variants), 208 orthologues and 1 paralogue.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | Flags |
|---|---|---|---|---|---|---|
| MGP_CAROLIEiJ_T0070842.1 | Sbno1-202 | 10118 | 1390aa | MGP_CAROLIEiJ_P0070842 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, |
| MGP_CAROLIEiJ_T0070841.1 | Sbno1-201 | 10028 | 1390aa | MGP_CAROLIEiJ_P0070841 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - |
| MGP_CAROLIEiJ_T0070843.1 | Sbno1-203 | 4167 | 1389aa | MGP_CAROLIEiJ_P0070843 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - |
| MGP_CAROLIEiJ_T0070850.1 | Sbno1-210 | 2508 | 784aa | MGP_CAROLIEiJ_P0070850 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - |
| MGP_CAROLIEiJ_T0070848.1 | Sbno1-208 | 2410 | 754aa | MGP_CAROLIEiJ_P0070848 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - |
| MGP_CAROLIEiJ_T0070852.1 | Sbno1-212 | 2100 | 663aa | MGP_CAROLIEiJ_P0070852 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - |
| MGP_CAROLIEiJ_T0070855.1 | Sbno1-215 | 772 | 211aa | MGP_CAROLIEiJ_P0070855 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - |
| MGP_CAROLIEiJ_T0070856.1 | Sbno1-216 | 599 | 133aa | MGP_CAROLIEiJ_P0070856 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - |
| MGP_CAROLIEiJ_T0070857.1 | Sbno1-217 | 353 | 92aa | MGP_CAROLIEiJ_P0070857 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - |
| MGP_CAROLIEiJ_T0070853.1 | Sbno1-213 | 5277 | 263aa | MGP_CAROLIEiJ_P0070853 | Nonsense mediated decay | - |
| MGP_CAROLIEiJ_T0070854.1 | Sbno1-214 | 1224 | 241aa | MGP_CAROLIEiJ_P0070854 | Nonsense mediated decay | - |
| MGP_CAROLIEiJ_T0070858.1 | Sbno1-218 | 2014 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - |
| MGP_CAROLIEiJ_T0070847.1 | Sbno1-207 | 1526 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - |
| MGP_CAROLIEiJ_T0070851.1 | Sbno1-211 | 1170 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - |
| MGP_CAROLIEiJ_T0070844.1 | Sbno1-204 | 1061 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - |
| MGP_CAROLIEiJ_T0070845.1 | Sbno1-205 | 977 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - |
| MGP_CAROLIEiJ_T0070846.1 | Sbno1-206 | 656 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - |
| MGP_CAROLIEiJ_T0070849.1 | Sbno1-209 | 591 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - |
