Transcript: ENST00000597558.5 SLC25A41-203

Description

solute carrier family 25 member 41 [Source:HGNC Symbol;Acc:HGNC:28533]

Gene Synonyms

APC4, FLJ40442, MGC34725

Location

Chromosome 19: 6,426,037-6,433,779 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 1 domain and feature, is associated with 5528 variant alleles and maps to 261 oligo probes.

Gene

This transcript is a product of gene ENSG00000181240.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000321510.7	SLC25A41-201	1535	370aa	ENSP00000322649.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45937	Q8N5S1-1	NM_173637.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000458275.6	SLC25A41-202	1630	242aa	ENSP00000405411.1	Nonsense mediated decay		Q8N5S1-2	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000597558.5	SLC25A41-203	1405	370aa	ENSP00000471238.1	Nonsense mediated decay	CCDS45937	Q8N5S1-1	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 8, Coding exons: 7, Transcript length: 1,405 bps, Translation length: 370 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8N5S1

CCDS

This transcript is a member of the Human CCDS set: CCDS45937

Transcript Support Level (TSL)

TSL:1

Version

ENST00000597558.5

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENST00000597558.5 SLC25A41-203

Summary

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Transcript: ENST00000597558.5 SLC25A41-203

Summary

About Us

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