Transcript: ENST00000409977.2 VSTM5-202

Description

V-set and transmembrane domain containing 5 [Source:HGNC Symbol;Acc:HGNC:34443]

Gene Synonyms

C11ORF90, LOC387804

Location

Chromosome 11: 93,818,232-93,850,618 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 9 domains and features, is associated with 13574 variant alleles and maps to 260 oligo probes.

Gene

This transcript is a product of gene ENSG00000214376.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000409977.2	VSTM5-202	3056	200aa	ENSP00000386607.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44709	A8MXK1	NM_001144871.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000398221.3	VSTM5-201	389	20aa	ENSP00000381277.3	Nonsense mediated decay		H0Y3Q1	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000414919.2	VSTM5-203	1397	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 3,056 bps, Translation length: 200 residues

MANE

This MANE Select transcript contains ENSP00000386607 and matches to NM_001144871.2 and NP_001138343.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: A8MXK1

CCDS

This transcript is a member of the Human CCDS set: CCDS44709

Transcript Support Level (TSL)

TSL:5

Version

ENST00000409977.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

not organism-supported [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000409977.2 VSTM5-202

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Transcript: ENST00000409977.2 VSTM5-202

Summary

About Us

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