Transcript: ENST00000378119.9 C6orf62-202

Description

chromosome 6 open reading frame 62 [Source:HGNC Symbol;Acc:HGNC:20998]

Gene Synonyms

DKFZP564G182, FLJ12619, XTP12

Location

Chromosome 6: 24,704,861-24,719,154 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 5 domains and features, is associated with 7111 variant alleles and maps to 514 oligo probes.

Gene

This transcript is a product of gene ENSG00000112308.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000378119.9	C6orf62-202	2452	229aa	ENSP00000367359.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4559	Q9GZU0-1	NM_030939.5	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000710317.1	C6orf62-203	4123	229aa	ENSP00000518198.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4559	A0A024R026	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000378102.3	C6orf62-201	741	200aa	ENSP00000367342.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS93869	Q9GZU0-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 2,452 bps, Translation length: 229 residues

MANE

This MANE Select transcript contains ENSP00000367359 and matches to NM_030939.5 and NP_112201.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9GZU0

CCDS

This transcript is a member of the Human CCDS set: CCDS4559

Transcript Support Level (TSL)

TSL:1

Version

ENST00000378119.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000378119.9 C6orf62-202

Summary

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Transcript: ENST00000378119.9 C6orf62-202

Summary

About Us

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