Transcript: ENST00000316105.7 PCDHB9-201

Description

protocadherin beta 9 [Source:HGNC Symbol;Acc:HGNC:8694]

Gene Synonyms

PCDH-BETA9, PCDH3H

Location

Chromosome 5: 141,187,161-141,191,541 forward strand.

About this transcript

This transcript has 1 exon, is annotated with 52 domains and features, is associated with 3369 variant alleles and maps to 412 oligo probes.

Gene

This transcript is a product of gene ENSG00000177839.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000316105.7	PCDHB9-201	4381	797aa	ENSP00000478606.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS75328	Q9Y5E1	NM_019119.5	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000624909.1	PCDHB9-203	616	73aa	ENSP00000485394.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A096LP50	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000623266.1	PCDHB9-202	498	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,

Summary

Statistics

Exons: 1, Coding exons: 1, Transcript length: 4,381 bps, Translation length: 797 residues

MANE

This MANE Select transcript contains ENSP00000478606 and matches to NM_019119.5 and NP_061992.3

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y5E1

CCDS

This transcript is a member of the Human CCDS set: CCDS75328

Transcript Support Level (TSL)

TSL:NA

Version

ENST00000316105.7

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000316105.7 PCDHB9-201

Summary

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Transcript: ENST00000316105.7 PCDHB9-201

Summary

About Us

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