Transcript: ENST00000298923.11 SLC6A5-201

Description

solute carrier family 6 member 5 [Source:HGNC Symbol;Acc:HGNC:11051]

Gene Synonyms

GLYT-2, GLYT2, NET1

Location

Chromosome 11: 20,599,594-20,654,890 forward strand.

About this transcript

This transcript has 15 exons, is annotated with 1 domain and feature, is associated with 26522 variant alleles and maps to 446 oligo probes.

Gene

This transcript is a product of gene ENSG00000165970.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000525748.6	SLC6A5-202	6876	797aa	ENSP00000434364.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7854	Q9Y345-1	NM_004211.5	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000298923.11	SLC6A5-201	2356	187aa	ENSP00000298923.7	Nonsense mediated decay		J3KNC4	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000528440.1	SLC6A5-203	1121	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 15, Coding exons: 3, Transcript length: 2,356 bps, Translation length: 187 residues

Transcript Support Level (TSL)

TSL:1

Version

ENST00000298923.11

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENST00000298923.11 SLC6A5-201

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Transcript: ENST00000298923.11 SLC6A5-201

Summary

About Us

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