Transcript: ENST00000296129.6 CDCP1-201

Description

CUB domain containing protein 1 [Source:HGNC Symbol;Acc:HGNC:24357]

Gene Synonyms

CD318, SIMA135

Location

Chromosome 3: 45,082,277-45,146,378 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 11 domains and features, is associated with 27037 variant alleles and maps to 534 oligo probes.

Gene

This transcript is a product of gene ENSG00000163814.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000296129.6	CDCP1-201	5963	836aa	ENSP00000296129.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2727	Q9H5V8-1	NM_022842.5	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000425231.2	CDCP1-202	1416	343aa	ENSP00000399342.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46812	Q9H5V8-3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000490471.1	CDCP1-203	563	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 5,963 bps, Translation length: 836 residues

MANE

This MANE Select transcript contains ENSP00000296129 and matches to NM_022842.5 and NP_073753.3

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9H5V8

CCDS

This transcript is a member of the Human CCDS set: CCDS2727

Transcript Support Level (TSL)

TSL:1

Version

ENST00000296129.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000296129.6 CDCP1-201

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Transcript: ENST00000296129.6 CDCP1-201

Summary

About Us

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