Transcript: ENST00000667032.1 LINC00412-204

Description

long intergenic non-protein coding RNA 412 [Source:HGNC Symbol;Acc:HGNC:42745]

Location

Chromosome 13: 27,236,282-27,250,711 reverse strand.

About this transcript

This transcript has 5 exons and maps to 162 oligo probes.

Gene

This transcript is a product of gene ENSG00000234772.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000610335.5	LINC00412-202	750	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000840486.1	LINC00412-208	1535	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000840485.1	LINC00412-207	1494	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000715722.1	LINC00412-205	1340	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000840484.1	LINC00412-206	1333	No protein	-	lncRNA	-	-
ENST00000444744.2	LINC00412-201	1323	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000840496.1	LINC00412-218	1200	No protein	-	lncRNA	-	-
ENST00000840487.1	LINC00412-209	1183	No protein	-	lncRNA	-	-
ENST00000840498.1	LINC00412-220	1002	No protein	-	lncRNA	-	-
ENST00000840494.1	LINC00412-216	891	No protein	-	lncRNA	-	-
ENST00000840497.1	LINC00412-219	873	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000840501.1	LINC00412-223	762	No protein	-	lncRNA	-	-
ENST00000840488.1	LINC00412-210	733	No protein	-	lncRNA	-	-
ENST00000840512.1	LINC00412-234	728	No protein	-	lncRNA	-	-
ENST00000840502.1	LINC00412-224	724	No protein	-	lncRNA	-	-
ENST00000840491.1	LINC00412-213	716	No protein	-	lncRNA	-	-
ENST00000840495.1	LINC00412-217	700	No protein	-	lncRNA	-	-
ENST00000840500.1	LINC00412-222	695	No protein	-	lncRNA	-	-
ENST00000840492.1	LINC00412-214	672	No protein	-	lncRNA	-	-
ENST00000840490.1	LINC00412-212	641	No protein	-	lncRNA	-	-
ENST00000840493.1	LINC00412-215	614	No protein	-	lncRNA	-	-
ENST00000840507.1	LINC00412-229	613	No protein	-	lncRNA	-	-
ENST00000840499.1	LINC00412-221	598	No protein	-	lncRNA	-	-
ENST00000840489.1	LINC00412-211	597	No protein	-	lncRNA	-	-
ENST00000840510.1	LINC00412-232	588	No protein	-	lncRNA	-	-
ENST00000840511.1	LINC00412-233	576	No protein	-	lncRNA	-	-
ENST00000840506.1	LINC00412-228	574	No protein	-	lncRNA	-	-
ENST00000620494.1	LINC00412-203	573	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000667032.1	LINC00412-204	562	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000840504.1	LINC00412-226	548	No protein	-	lncRNA	-	-
ENST00000840503.1	LINC00412-225	544	No protein	-	lncRNA	-	-
ENST00000840509.1	LINC00412-231	529	No protein	-	lncRNA	-	-
ENST00000840505.1	LINC00412-227	472	No protein	-	lncRNA	-	-
ENST00000840508.1	LINC00412-230	437	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 562 bps,

Version

ENST00000667032.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000667032.1 LINC00412-204

Summary

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Transcript: ENST00000667032.1 LINC00412-204

Summary

About Us

Get help

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