Human (GRCh38.p14)
Description

LSM1 homolog, mRNA degradation associated [Source:HGNC Symbol;Acc:HGNC:20472]

Gene Synonyms

CASM, YJL124C

Location
About this transcript

This transcript has 4 exons, is annotated with 9 domains and features, is associated with 6003 variant alleles and maps to 376 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000311351.9LSM1-201906133aaENSP00000310596.4
 
Protein coding
CCDS6103A0A0S2Z590 O15116 NM_014462.3MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000520755.5LSM1-20397544aaENSP00000430021.1
 
Protein coding
E5RH18 -GENCODE basicTSL:1
ENST00000523511.1LSM1-20570044aaENSP00000428307.1
 
Nonsense mediated decay
E5RJ47 -TSL:3
ENST00000522515.5LSM1-2041568No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000520286.5LSM1-202776No protein-
 
Protein coding CDS not defined
--TSL:1
Statistics

Exons: 4, Coding exons: 4, Transcript length: 906 bps, Translation length: 133 residues

MANE

This MANE Select transcript contains ENSP00000310596 and matches to NM_014462.3 and NP_055277.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: O15116

CCDS

This transcript is a member of the Human CCDS set: CCDS6103

Transcript Support Level (TSL)

TSL:1

Version

ENST00000311351.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.