Transcript: ENST00000280614.4 NOCT-201

Description

nocturnin [Source:HGNC Symbol;Acc:HGNC:14254]

Gene Synonyms

CCR4C, CCR4L, CCRN4L, NOC

Location

Chromosome 4: 139,015,781-139,045,939 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 13 domains and features, is associated with 14234 variant alleles and maps to 308 oligo probes.

Gene

This transcript is a product of gene ENSG00000151014.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000280614.4	NOCT-201	1962	431aa	ENSP00000280614.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3743	Q9UK39	NM_012118.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000630479.1	NOCT-203	1572	167aa	ENSP00000486546.1	Nonsense mediated decay		Q8WTX0	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000515616.1	NOCT-202	739	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 1,962 bps, Translation length: 431 residues

MANE

This MANE Select transcript contains ENSP00000280614 and matches to NM_012118.4 and NP_036250.2

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UK39

CCDS

This transcript is a member of the Human CCDS set: CCDS3743

Transcript Support Level (TSL)

TSL:1

Version

ENST00000280614.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000280614.4 NOCT-201

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Transcript: ENST00000280614.4 NOCT-201

Summary

About Us

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