Description

CLN6, transmembrane ER protein [Source:HGNC Symbol;Acc:HGNC:2077]

Synonyms

HsT18960, nclf, FLJ20561

Location
About this transcript

This transcript has 7 exons, is annotated with 3 domains and features, is associated with 356 variations and maps to 364 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
CLN6-201ENST00000249806.102243311aaENSP00000249806
 
Protein coding
CCDS10227A0A024R601 Q9NWW5 NM_017882
NP_060352
TSL:1GENCODE basicAPPRIS P1
CLN6-202ENST00000538696.51343343aaENSP00000445770
 
Protein coding
-Q9NWW5 -TSL:2GENCODE basic
CLN6-206ENST00000565471.61075158aaENSP00000457384
 
Protein coding
-H3BTY4 -TSL:2GENCODE basic
CLN6-207ENST00000566347.5981248aaENSP00000457783
 
Protein coding
-H3BUT1 -TSL:1GENCODE basic
CLN6-204ENST00000564752.1900213aaENSP00000457822
 
Protein coding
-H3BUV4 -TSL:3GENCODE basic
CLN6-222ENST00000637667.1874251aaENSP00000489843
 
Protein coding
-A0A1B0GTU6 -CDS 3' incompleteTSL:1
CLN6-221ENST00000637494.1765215aaENSP00000490057
 
Protein coding
-A0A1B0GUD2 -TSL:5GENCODE basic
CLN6-214ENST00000636314.1442103aaENSP00000490295
 
Protein coding
-A0A1B0GUY3 -TSL:3GENCODE basic
CLN6-224ENST00000638076.12323171aaENSP00000490373
 
Nonsense mediated decay
-A0A0S2Z5D0 -TSL:1
CLN6-219ENST00000637329.1120486aaENSP00000489649
 
Nonsense mediated decay
-A0A1B0GTD3 -CDS 5' incompleteTSL:5
CLN6-210ENST00000635747.1118161aaENSP00000490627
 
Nonsense mediated decay
-A0A1B0GVR8 -TSL:5
CLN6-213ENST00000636212.11053108aaENSP00000489851
 
Nonsense mediated decay
-A0A1B0GTV3 -TSL:5
CLN6-208ENST00000567060.5945105aaENSP00000454818
 
Nonsense mediated decay
-H3BNF1 -TSL:2
CLN6-220ENST00000637450.186876aaENSP00000490204
 
Nonsense mediated decay
-A0A1B0GUQ7 -TSL:3
CLN6-223ENST00000637823.171776aaENSP00000490011
 
Nonsense mediated decay
-A0A1B0GU90 -CDS 5' incompleteTSL:5
CLN6-216ENST00000636876.165567aaENSP00000489950
 
Nonsense mediated decay
-A0A1B0GU39 -TSL:5
CLN6-218ENST00000637223.165261aaENSP00000490010
 
Nonsense mediated decay
-A0A1B0GVR8 -TSL:5
CLN6-225ENST00000638144.1576No protein-
 
Processed transcript
---TSL:5
CLN6-203ENST00000563917.2557No protein-
 
Processed transcript
---TSL:5
CLN6-217ENST00000636964.13335No protein-
 
Retained intron
---TSL:2
CLN6-215ENST00000636674.12005No protein-
 
Retained intron
---TSL:5
CLN6-205ENST00000564846.11762No protein-
 
Retained intron
---TSL:2
CLN6-211ENST00000635754.11441No protein-
 
Retained intron
---TSL:NA
CLN6-212ENST00000636020.1894No protein-
 
Retained intron
---TSL:2
CLN6-209ENST00000569336.2557No protein-
 
Retained intron
---TSL:NA
Statistics

Exons: 7, Coding exons: 7, Transcript length: 2,243 bps, Translation length: 311 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS10227

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NWW5

Transcript Support Level (TSL)

TSL:1

Version

ENST00000249806.10

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays