Human (GRCh38.p14)
Description

LIM homeobox 6 [Source:HGNC Symbol;Acc:HGNC:21735]

Gene Synonyms

HLHX6, LHX6.1

About this transcript

This transcript has 10 exons, is annotated with 25 domains and features, is associated with 11903 variant alleles and maps to 477 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000394319.9LHX6-2043574392aaENSP00000377854.4
 
Protein coding
CCDS6838Q9UPM6-3 NM_014368.5MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000559895.5LHX6-2103587176aaENSP00000475927.1
 
Protein coding
CCDS59144Q9UPM6-6 -GENCODE basicTSL:2
ENST00000340587.7LHX6-2013457377aaENSP00000340137.3
 
Protein coding
CCDS6837Q9UPM6-4 -GENCODE basicTSL:1
ENST00000373755.6LHX6-2033384363aaENSP00000362860.2
 
Protein coding
CCDS56583Q9UPM6-1 -GENCODE basicTSL:1
ENST00000373754.6LHX6-2023278348aaENSP00000362859.2
 
Protein coding
CCDS87683Q9UPM6-2 -GENCODE basicTSL:1
ENST00000541397.2LHX6-2072942366aaENSP00000441464.2
 
Protein coding
CCDS56584Q9UPM6-5 -GENCODE basicTSL:2
ENST00000482062.1LHX6-20691850aaENSP00000453798.2
 
Protein coding
H0YMY8 -GENCODE basicTSL:2
ENST00000560485.1LHX6-21273633aaENSP00000453606.1
 
Protein coding
H0YMH3 -TSL:4CDS 3' incomplete
ENST00000464484.3LHX6-20566635aaENSP00000452811.1
 
Protein coding
H0YKH7 -GENCODE basicTSL:2
ENST00000559529.1LHX6-209550No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000558672.1LHX6-208592No protein-
 
Retained intron
--TSL:4
ENST00000560152.1LHX6-211582No protein-
 
Retained intron
--TSL:3
Statistics

Exons: 10, Coding exons: 10, Transcript length: 3,574 bps, Translation length: 392 residues

MANE

This MANE Select transcript contains ENSP00000377854 and matches to NM_014368.5 and NP_055183.2

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UPM6

CCDS

This transcript is a member of the Human CCDS set: CCDS6838

Transcript Support Level (TSL)

TSL:1

Version

ENST00000394319.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.