Description

VPS35, retromer complex component [Source:HGNC Symbol;Acc:HGNC:13487]

Synonyms

PARK17, MEM3, FLJ10752

Location
About this transcript

This transcript has 17 exons, is associated with 29 variations and maps to 673 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
VPS35-201ENST00000299138.116790796aaENSP00000299138
 
Protein coding
CCDS10721Q96QK1 NM_018206
NP_060676
TSL:1GENCODE basicAPPRIS P1
VPS35-212ENST00000640313.114146aaENSP00000491212
 
Protein coding
---GENCODE basic
VPS35-210ENST00000568784.6401748aaENSP00000456274
 
Nonsense mediated decay
-H3BRJ7 -TSL:1
VPS35-208ENST00000568612.569741aaENSP00000461469
 
Nonsense mediated decay
-I3L4S0 -TSL:5
VPS35-202ENST00000561713.158947aaENSP00000461423
 
Nonsense mediated decay
-I3L4P4 -TSL:4
VPS35-209ENST00000568642.5447No protein-
 
Processed transcript
---TSL:3
VPS35-211ENST00000569950.11096No protein-
 
Retained intron
---TSL:5
VPS35-205ENST00000563984.1775No protein-
 
Retained intron
---TSL:2
VPS35-204ENST00000563884.1759No protein-
 
Retained intron
---TSL:2
VPS35-203ENST00000562420.1740No protein-
 
Retained intron
---TSL:2
VPS35-207ENST00000568191.1520No protein-
 
Retained intron
---TSL:4
VPS35-206ENST00000565228.1487No protein-
 
Retained intron
---TSL:3
Statistics

Exons: 17, Coding exons: 1, Transcript length: 4,017 bps, Translation length: 48 residues

Transcript Support Level (TSL)

TSL:1

Version

ENST00000568784.6

Type

Known nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript-based displays