Human (GRCh38.p14)
Description

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1 [Source:HGNC Symbol;Acc:HGNC:11102]

Gene Synonyms

HARP, HHARP

About this transcript

This transcript has 18 exons, is annotated with 34 domains and features, is associated with 29536 variant alleles and maps to 579 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000357276.9SMARCAL1-2013201954aaENSP00000349823.4
 
Protein coding
CCDS2403Q9NZC9 NM_014140.4MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P1TSL:2
ENST00000444508.6SMARCAL1-2093244954aaENSP00000398969.2
 
Protein coding
CCDS2403C9J8F8 Q9NZC9 -GENCODE basicAPPRIS P1TSL:2
ENST00000430374.6SMARCAL1-2073210954aaENSP00000405077.2
 
Protein coding
CCDS2403C9J6I8 Q9NZC9 -GENCODE basicAPPRIS P1TSL:2
ENST00000425815.6SMARCAL1-2053176954aaENSP00000394410.2
 
Protein coding
CCDS2403C9JS37 Q9NZC9 -GENCODE basicAPPRIS P1TSL:3
ENST00000358207.9SMARCAL1-2023056954aaENSP00000350940.5
 
Protein coding
CCDS2403Q9NZC9 -GENCODE basicAPPRIS P1TSL:1
ENST00000697899.1SMARCAL1-2152977876aaENSP00000513470.1
 
Protein coding
A0A8V8TLD4 -GENCODE basic
ENST00000697906.1SMARCAL1-2222826876aaENSP00000513475.1
 
Protein coding
A0A8V8TLD4 -GENCODE basic
ENST00000392128.6SMARCAL1-2032431796aaENSP00000375974.2
 
Protein coding
H7BYI2 -TSL:1CDS 5' incomplete
ENST00000427645.5SMARCAL1-206977325aaENSP00000392997.1
 
Protein coding
H7C051 -TSL:3CDS 5' and 3' incomplete
ENST00000434435.1SMARCAL1-20854492aaENSP00000402967.1
 
Protein coding
C9JP32 -TSL:4CDS 3' incomplete
ENST00000412913.1SMARCAL1-204538141aaENSP00000390248.1
 
Protein coding
C9JHQ1 -TSL:4CDS 3' incomplete
ENST00000445153.1SMARCAL1-210484161aaENSP00000400473.1
 
Protein coding
H7C1I3 -TSL:5CDS 5' and 3' incomplete
ENST00000697907.1SMARCAL1-2233054381aaENSP00000513476.1
 
Nonsense mediated decay
A0A8V8TMS6 --
ENST00000697901.1SMARCAL1-2173028381aaENSP00000513471.1
 
Nonsense mediated decay
A0A8V8TMS6 --
ENST00000697903.1SMARCAL1-2193002453aaENSP00000513472.1
 
Nonsense mediated decay
A0A8V8TLB3 --
ENST00000697905.1SMARCAL1-2212962453aaENSP00000513474.1
 
Nonsense mediated decay
A0A8V8TLB3 --
ENST00000697904.1SMARCAL1-2202926453aaENSP00000513473.1
 
Nonsense mediated decay
A0A8V8TLB3 --
ENST00000479008.1SMARCAL1-211633No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000697898.1SMARCAL1-2143700No protein-
 
Retained intron
---
ENST00000697900.1SMARCAL1-2163198No protein-
 
Retained intron
---
ENST00000697902.1SMARCAL1-2183173No protein-
 
Retained intron
---
ENST00000697908.1SMARCAL1-2243036No protein-
 
Retained intron
---
ENST00000486983.2SMARCAL1-2122240No protein-
 
Retained intron
--TSL:2
ENST00000697911.1SMARCAL1-2272046No protein-
 
Retained intron
---
ENST00000697909.1SMARCAL1-2251811No protein-
 
Retained intron
---
ENST00000697910.1SMARCAL1-2261309No protein-
 
Retained intron
---
ENST00000496037.1SMARCAL1-213542No protein-
 
Retained intron
--TSL:4
Statistics

Exons: 18, Coding exons: 16, Transcript length: 3,210 bps, Translation length: 954 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NZC9

CCDS

This transcript is a member of the Human CCDS set: CCDS2403

Transcript Support Level (TSL)

TSL:2

Version

ENST00000430374.6

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.