Transcript: ENST00000334384.5 ARGFX-201

Description

arginine-fifty homeobox [Source:HGNC Symbol;Acc:HGNC:30146]

Location

Chromosome 3: 121,567,949-121,590,622 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 12 domains and features, is associated with 11094 variant alleles and maps to 306 oligo probes.

Gene

This transcript is a product of gene ENSG00000186103.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000334384.5	ARGFX-201	5047	315aa	ENSP00000335578.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33834	A6NJG6	NM_001012659.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000651603.1	ARGFX-202	4970	315aa	ENSP00000498601.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33834	A6NJG6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 5,047 bps, Translation length: 315 residues

MANE

This MANE Select transcript contains ENSP00000335578 and matches to NM_001012659.2 and NP_001012677.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: A6NJG6

CCDS

This transcript is a member of the Human CCDS set: CCDS33834

Transcript Support Level (TSL)

TSL:3

Version

ENST00000334384.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000334384.5 ARGFX-201

Summary

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Transcript: ENST00000334384.5 ARGFX-201

Summary

About Us

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