Transcript: ENST00000217260.9 RSPO4-201

Description

R-spondin 4 [Source:HGNC Symbol;Acc:HGNC:16175]

Gene Synonyms

C20ORF182, DJ824F16.3

Location

Chromosome 20: 958,452-1,002,311 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 14 domains and features, is associated with 19060 variant alleles and maps to 343 oligo probes.

Gene

This transcript is a product of gene ENSG00000101282.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000217260.9	RSPO4-201	2757	234aa	ENSP00000217260.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42846	Q2I0M5-1	NM_001029871.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000400634.2	RSPO4-202	722	172aa	ENSP00000383475.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42845	Q2I0M5-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 2,757 bps, Translation length: 234 residues

MANE

This MANE Select transcript contains ENSP00000217260 and matches to NM_001029871.4 and NP_001025042.2

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q2I0M5

CCDS

This transcript is a member of the Human CCDS set: CCDS42846

Transcript Support Level (TSL)

TSL:1

Version

ENST00000217260.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000217260.9 RSPO4-201

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Transcript: ENST00000217260.9 RSPO4-201

Summary

About Us

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